Harlem Hospital is fully accredited by the Joint Commission CMS and by the Council of Graduate Medical Education of the American Medical Association. The following residency and fellowship training programs in the hospital are accredited by the Residency Review Committees of the Accreditation Council for Graduate Medical Education (ACGME). The Commission on Dental Accreditation grants acccreditation status to dental residency programs:
- General Surgery
- Internal Medicine
- Diagnostic Radiology
- Pediatrics
- General Psychiatry
- Child Psychiatry
- Gastroenterology
- Nephrology
- Infectious Disease
- Pulmonary Disease
- Oral and Maxillofacial Surgery
- Advanced Education General Dentistry
- Pediatric Dentistry
Harlem hospital has an integrated plastic surgery fellowship program with New York-Presbyterian Hospital. Other accredited residency programs with rotations through Harlem Hospital Center include Emergency Medicine (Metropolitan Hospital), Obstetrics and Gynecology (Jamaica Hospital) and Oral and Maxillofacial Surgery (Woodhull Medical and Mental Hospital). Other services in the hospital include pathology, ophthalmology, orthopedics, urology, neurosurgery, vascular surgery, thoracic surgery, pediatric surgery, cardiology, neurology and rehabilitation medicine.