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Research Faculty

Address
630 West 168th Street
Room 15-409
New York, NY 10032


Phone: 212-342-0546
Fax: 212-305-5498

rv2025@columbia.edu
Education and Training
Ph.D. 1974 Yale University
Richard Vallee, Ph.D.
Professor of Pathology;
Professor of Anatomy and Cell Biology

Research Summary
My lab is interested in a variety of biological phenomena involving motor proteins, with a major emphasis on cytoplasmic dynein. Cytoplasmic dynein was initially described as the motor for retrograde axonal transport, but it is now known to have important functions in mitosis, cell migration, growth cone motility, virus transport, and many other aspects of neuronal and nonneuronal cell behavior, many of which are under investigation in the lab.

One project involves the role of cytoplasmic dynein in the human brain developmental disease lissencephaly. This condition arises from mutations in the novel dynein regulator, LIS1. We find that LIS1 and cytoplasmic dynein are required for fibroblast migration and growth cone extension. Using in utero electroporation into embryonic rat brain we have also performed RNAi for LIS1, cytoplasmic dynein, myosin II, kinesin, and additional factors in neural progenitor cells. By live imaging of brain slices we can directly monitor effects on neuronal progenitor/stem cell division, differentiation, and migration. We can also introduce markers for microtubules, centrosomes, nuclei, and other subcellular structures into neural progenitor cells (Fig 1; 2), leading to exciting new insights into the mechanisms responsible for neuronal migration.

We have also investigated the role of LIS1 and of the LIS1- and dynein-interacting proteins NudE and NudEL (Nde1 and Ndel1) in cytoplasmic dynein motor function using protein biochemistry and single molecule techniques. Our results (with the S. Gross lab at UC Irvine) indicate that NudE, LIS1 and dynein form a supercomplex which exhibits markedly persistent force production under load. We are currently evaluating the biological implications of this behavior, and examining the effect of other disease genes and mutations on dynein mechanochemistry.

We have recently found that cytoplasmic dynein is required for end-on attachment of microtubules to kinetochores in mitotic cells (Fig. 3), in addition to its role in removing mitotic checkpoint proteins from these sites and in poleward chromosome movement. We plan to explore how the diverse array of known and unknown dynein interacting proteins regulate kinetochore behavior and chromosome segregation.

We are also exploring how cytoplasmic dynein may be differentially recruited to vesicular vs. pathogenic forms of cargo. We find a direct interaction between dynein and adenovirus through a specific capsid protein, and we are exploring the therapeutic and evolutionary significance of these results. We are also trying to define the considerably more complex and regulated mechanisms for recruitment of cytoplasmic dynein to nuclei and other membranous organelles.

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Fig. 1: Neuronal migration in live rat brain slices. Centrosome moves continuously, followed by very discontinuous nuclear movements. LIS1 RNAi (right) inhibits centrosome movement, and arrests movement of nucleus (as it moves out of focal plane). Centrosomes labeled with RFP centrin (shown in green); nucleus labeled with histone H1 (shown in red). From Tsai, J.-W., et al., 2007

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Fig. 2: Behavior of neuronal precursor cell microtubules in live brain slices. Plus ends of growing microtubules are labeled with GFP-EB3 (green); centrosomes with RFP centrin (red). Movie at left focuses on microtubules in migratory process; movie at right includes microtubules in cell body region. From Tsai, J.-W., et al., 2007.

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Fig. 3: Metaphase kinetochores in control (left) and cytoplasmic dynein defective (right) HeLa cells. Dynein inhibition disrupts normal oscillations of paired kinetochores, consistent with abnormal microtubule attachment. Kinetochores labeled with GFP-CENP-A; cells were arrested in metaphase with Mg132. (From Varma, D., et al., 2008).

Selected Publications

1. Grabham, P.W., Seale, G.E. , Bennecib, M., Goldberg, D.J. and Vallee, R.B.  (2007). Cytoplasmic dynein and LIS1 are required for microtubule advance during growth cone remodeling and fast axonal outgrowth. J Neurosci. 27:5823-34.

2. Tsai, J.W., Bremner, K.H. , and Vallee, R.B. (2007). Dual subcellular roles for LIS1 and dynein in radial neuronal migration in live brain tissue. Nat Neurosci. 10:970-9.

3. Stehman, S. A., Chen, Y., McKenney, R. J., and Vallee, R.B. (2007). NudE and NudEL Are Required for Mitotic Progression and Are Involved in Dynein Recruitment to Kinetochores.  J. Cell Biol., 178:583-594.

4. Varma, D., Monzo, P., Stehman, S. A., and Vallee, R. B. (2008 ) Direct role of dynein motor in stable kinetochore-microtubule attachment, orientation, and alignment. J. Cell Biol. 182:1045-1054.

5. Vallee, R. B., Seale, G. E., and Tsai, J.-W. (2009) Emerging Roles for Myosin II and Cytoplasmic Dynein in Migrating Neurons and Growth Cones. Trends Cell Biol.19:347-355.

6. Wang, X., Tsai, J. W., Imai, J. H., Lian, W. N., Vallee, R. B., and Shi, S.  H. (2009). Asymmetric centrosome inheritance maintains neural progenitors in  the neocortex. Nature 461, 947-955.

7. Bremner, K. H., Scherer, J., Yi, J., Vershinin, M., Gross, S. P., and Vallee, R. B. (2009). Adenovirus transport via direct interaction of cytoplasmic dynein with the viral capsid hexon subunit. Cell Host Microbe 6, 523-535.

8. McKenney, R. J.,* Vershinin, M.,* Vallee R. B.,+ and Gross, S. P.+  (2010)  LIS1 and NudE induce a persistent dynein force-producing state.  Cell 141:304-314.  (*,+ Equal authorship.)

    

9. Varma, D. Dawn, A., Ghosh Roy, A., Zhao, Y, Keen, J., Vallee, R. B., and Williams, J. C.  (2010)  Development and Application of in Vivo Molecular Traps: Trapping Dynein Light Chains Differentially Affects Dynein-mediated Process.  Proc. Natl. Acad. Sci. USA. 107: 3493-3498.

 

Honors and Awards

1991 Fellow, AAAS

1996 NIH Merit Award

1998-2001 Council Delegate, AAAS

1999-2001 H. Arthur Smith Chair in Cancer Research

Committees , Council, and Professional Society Memberships

1989 Associate Editor, Cell Motil. Cytoskel.

1986, 1991, 1998 Series Editor, Methods in Enzymology, Vol. 134, 196, and 298

1989-1993 ACS Advisory Committee on Cell and Molecular Biology

1989-1994 Editorial Board, Journal of Biological Chemistry

Keywords

dynein ATPase, neuronal transport, protein structure function, regulatory gene, Golgi apparatus, cell cycle, cytoplasm, gene expression, microtubule associated protein, organelle, phosphorylation, complementary DNA, electron microscopy, fusion gene, geneti
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