Recent Palmer Laboratory Publications

  1. M. L. Gill and A. G. Palmer, Local isotropic diffusion approximation for coupled internal and overall molecular motions in NMR spin relaxation, J. Phys. Chem. B 118, 11120-11128 (2014). doi: 10.1021/jp506580c. PMCID: PMC4174990.
  2. Y. Li, M. Rance, and A. G. Palmer, Rotation operator propagators for time-varying radiofrequency pulses in NMR spectroscopy: Applications to shaped pulses and pulse trains, J. Magn. Reson. 248, 105-114 (2014). doi: 10.1016/j.jmr.2014.01.008.
  3. I. Sher, S. C. Chang, Y. Li, S. Chhabra, A. G. Palmer, R. S Norton, and J. H. Chill, Conformational flexibility in the binding surface of the potassium channel blocker ShK, ChemBioChem. 15, 2402-2410 (2014). doi: 10.1002/cbic.201402295.
  4. B. Ergel, M. L. Gill, L. Brown, B. Yu, A. G. Palmer, and J. F. Hunt, Protein dynamics control progression of the catalytic reaction cycle of AlkB, J. Biol. Chem. 289, 29584-29601 (2014). doi: 10.1074/jbc.M114.575647.
  5. K. A. Stafford and A. G. Palmer, Evidence from molecular dynamics simulations for conformational preorganization in the ribonuclease H active site, F1000Research, 3:67 (2014) doi: 10.12688/f1000research.3605.2. PMCID: PMC3789780.
  6. K. A. Stafford, F. Ferrage, J.-H. Cho, and A. G. Palmer, Side chain dynamics of carboxyl and carbonyl groups in the catalytic function of Escherichia coli ribonuclease H, J. Am. Chem. Soc. 135, 18024-18027 (2013). doi: 10.1021/ja409479y. PMCID: PMC3918730.
  7. P. Robustelli, N. Trbovic, R. A. Friesner, and A. G. Palmer, Conformational dynamics of the partially disordered yeast transcription factor GCN4, J. Chem. Theory Comput. 9, 5190–5200 (2013). doi: 10.1021/ct400654r. PMCID: PMC3882080.
  8. K.A. Stafford, P. Robustelli, R. A. Friesner, and A.G. Palmer, Thermal adaptation of conformational dynamics in ribonuclease H, PLoS Comp. Biol. 9, e1003218 (2013). doi:10.1371/journal.pcbi.1003218. PMCID: PMC3789780.
  9. Y. Li, N. Altorelli, F. Bahna, B. Honig, L. Shapiro and A. G. Palmer, Mechanism of E-cadherin dimerization probed by NMR relaxation dispersion, Proc. Nat. Acad. Sci. USA 110, 16462–16467 (2013). doi: 10.1073/pnas.1314303110. PMCID: PMC3799306.
  10. T. Zeiske, K. A. Stafford, R. A. Friesner, A. G. Palmer Starting-structure dependence of nanosecond timescale inter-substate transitions and reproducibility of MD-derived order parameters, Proteins 81, 499-509 (2013). doi: 10.1002/prot.24209. PMCID PMC3557728.
  11. P. Robustelli, K. A. Stafford, and A. G. Palmer, Interpreting protein structural dynamics from NMR chemical shifts, J. Am. Chem. Soc., 134, 6365–6374 (2012). doi: 10.1021/ja300265w. PMCID: PMC3324661.
  12. M. L. Gill and A. G. Palmer, Multiplet-filtered and gradient-selected zero-quantum TROSY experiments for 13C1H3 methyl groups in proteins, J. Biomol. NMR 51, 245-251 (2011). doi: 10.1007/s10858-011-9533-1. PMCID: PMC3280329.
  13. J.-H. Cho, V. Muralidharan, M. Vila-Perello, D. P. Raleigh, T. W. Muir, and A. G. Palmer, Tuning protein autoinhibition by domain destablization, Nat. Struct. Mol. Biol. 18, 550-555 (2011). doi:10.1038/nsmb.2039. PMCID: PMC3265570.
  14. Y. Li and A. G. Palmer, Narrowing of protein NMR spectral lines broadened by chemical exchange, J. Am. Chem. Soc. 132, 8856-8857 (2010). PMCID: PMC2921271.
  15. J.-H. Cho, N. E. O’Connell, D. P. Raleigh, and A. G. Palmer, φ-value analysis for ultra-fast folding proteins by NMR relaxation dispersion, J. Am. Chem. Soc. 132, 450-451 (2010). PMCID: PMC2860800.
  16. Y. Li and A. G. Palmer, TROSY-selected ZZ-exchange experiment for characterizing slow chemical exchange in large proteins, J. Biomol. NMR 45, 357–360, (2009). PMCID: PMC2810196.
  17. N. E. O’Connell, M. J. Grey, Y. Tang, P. Kosuri, V. Z. Miloushev, D. P. Raleigh, and A. G. Palmer, Partially folded equilibrium intermediate of the villin headpiece HP67 defined by 13C relaxation dispersion, J. Biomol. NMR 45, 85-98 (2009). PMCID: PMC2810208.
  18. V. Z. Miloushev, J. A. Levine, M. A. Arbing, J. F. Hunt, G. S. Pitt, and A. G. Palmer, Solution structure of the NaV1.2 C-terminal EF-hand domain, J. Biol. Chem. 284, 6446-6454 (2009). PMCID: PMC2649098.
  19. N. Trbovic, J. Cho, R. Abel, R. A. Friesner, M. Rance, and A. G. Palmer, Protein side-chain dynamics and residual conformational entropy, J. Am. Chem. Soc. 131, 615–622 (2009). PMCID: PMC2413295.

A more complete list of publications is available at PubMed.


Updated 1/28/2015 (agp6@columbia.edu)